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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SMC3
wikigenes
PDBj
CellType: CUTLL1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7427136
GSM4230109: ChIP-seq CUTLL1 SMC3 rep2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMC3
Cell type
Cell type Class
Blood
Cell type
CUTLL1
NA
NA
Attributes by original data submitter
Sample
source_name
ChIP-seq_CUTLL1_SMC3
cell type
CUTLL1
antibody
SMC3
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1% formaldehyde crosslinking for 10 minutes and nuclei isolated and sonicated with Qsonica Q500 micro tip Illumina TruSeq DNA sample library prep kit
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
40778194
Reads aligned (%)
99.1
Duplicates removed (%)
4.2
Number of peaks
20483 (qval < 1E-05)
hg19
Number of total reads
40778194
Reads aligned (%)
98.3
Duplicates removed (%)
5.2
Number of peaks
20324 (qval < 1E-05)
Base call quality data from
DBCLS SRA